Microfluidic tray under cell sorter

Creating a low-cost cell sorter prototype

The high cost and complexity of cell and gene therapy manufacturing continues to limit patient access and poses significant challenges for companies looking to scale their technology. To address these barriers, new tools are needed to deliver faster, more efficient data on quality, safety and efficacy during the manufacturing process.

We set out to prove that in-process real-time analytics can be implemented both quickly and cost-effectively in cell and gene therapy process development. Using off-the-shelf components, we developed a proof-of-concept for a low-cost, label-free cell sorter. The prototype directly integrates measurement capabilities in-process, offering the potential for improved insights, reduced risk of batch failure and better scalability for cell and gene therapy production.

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The challenges of manufacturing cell and gene therapies

Cell and gene therapies are increasingly emerging as life-saving treatments for many conditions, from oncology to rare diseases. Despite many achieving regulatory approval, the industry continues to face significant commercial hurdles in producing them at scale, owing to high manufacturing costs and off-line quality control processes that can take weeks to complete. Without technical innovation to tackle these challenges, the market risks slowing down – significantly limiting patient access.

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While there are already tools for measurement available, these are often complex, expensive and not tailored to the specific needs of a particular cell or gene therapy. Manufacturers of personalised medicines need cost-effective, agile tools that can easily be integrated into existing workflows to perform live sampling and deliver real-time feedback.

Max Chambers, Applied Science Consultant, Team Consulting
Gloved hands holding batteries over cell sorter rig

A low-cost solution to early-stage measurement and process understanding

To help tackle this challenge, we developed a prototype for a low-cost cell sorter that enables effective quality control measurements during the process development stage or during manufacture. The prototype integrates advanced image processing techniques for precise identification and separation of cells based on their phenotype.

Designed for label-free sorting, the device is able to separate spherical particles based on their size and shape alone. This prevents the need for them, or cells in a therapy process, to be modified before going into the device, helping to streamline the integration of quality control and analytics by combining multiple steps into a single device.

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Label-free strategies offer an effective way to reduce turn-around times and costs associated with reagents. Meanwhile, machine learning tools can be developed to further enhance the accuracy and efficiency of cell sorting by predicting cell behaviour and optimising sorting parameters, for example when phenotypic differentiation is difficult. These tools can also facilitate real-time monitoring and adaptive adjustments, ensuring consistent quality and performance throughout the process.

Laureline Mahe, Head of Applied Science, Team Consulting
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Fast and cost-efficient prototype development

Our applied science experts rapidly developed the cell-sorter rig by integrating and customising commercial, off-the-shelf components to leverage economies of scale – including a camera, optics, Raspberry Pi and existing image processing libraries. This modular design enables seamless integration into cell therapy process development platforms, allowing for rapid data collection and fast iteration.

Integrating microfluidics and optics technology

Our team began by defining the functional and technical requirements for the prototype during an initial product definition phase. To simulate morphological-based cell sorting, we selected two types of spherical polystyrene particles, which were flowed through a microfluidic cartridge. These particles were detected and classified in real time using a custom image processing algorithm, before being actively directed into separate output channels.

We employed a systems engineering approach to integrate fluidics and optics into a compact, modular design that interfaces accurately with the microfluidic cartridge. After validating the concept with the bench-top prototype, we advanced the design by miniaturising the system. This included custom-fabricated microfluidic chips and an optimised optical setup, resulting in a more robust and scalable solution.

Man at computer working on microfluidic CAD

Compact system development

To enable seamless integration of the sensing system in in-line, on-line, or at-line configurations, we used optical simulation software to compact and refine the design. Our applied scientists explored multiple strategies—including reduced-size optics, folding mirrors and relay systems—to achieve a smaller footprint without compromising on performance.

The simulations allowed us to evaluate key parameters such as image resolution, contrast and aberration throughout the process. This also enabled direct comparison between off-the-shelf components and custom lens designs, helping to balance performance with cost.

Simulations offer an effective way to speed up development, reduce risks and help to identify challenges early in order to save costs in the long run. Applying optical simulation allowed us to meet both geometric and budgetary constraints, while maintaining acceptable optical performance. It also provided early insight into mechanical and manufacturing considerations including a variety of tolerances, allowing us to better understand their potential impacts.

Olympia Pachoumi, Senior Applied Science Consultant, Team Consulting
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A new approach to cell and gene therapy in-process analytics

By shifting analytics from off-line to real-time, this approach highlights the potential for cell and gene therapy manufacturers to reduce reliance on slow and expensive quality control testing. Instead, it brings critical measurements directly into the manufacturing process.

The result is a faster, more predictable and robust development cycle for cell therapies, ultimately reducing, or even eliminating, the delays associated with traditional release testing.

Our approach illustrates how practical, data-driven solutions can empower developers to streamline manufacturing, shorten time to market and strengthen their case for both regulatory approval and commercial success.

Ongoing advances in technology miniaturisation and artificial intelligence are poised to accelerate the evolution of multimodal process analytical technologies—particularly those that are contactless and label-free. These innovations hold the potential to significantly reduce the cost and complexity of developing cell and gene therapies, while ensuring consistent product quality.

Laureline Mahe, Head of Applied Science, Team Consulting

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